Sequence Simulation
===================

Classes for simulating codon sequences under various evolutionary models.

.. currentmodule:: crabml.simulate

Base Classes
------------

.. currentmodule:: crabml.simulate.base

SequenceSimulator
~~~~~~~~~~~~~~~~~

.. autoclass:: SequenceSimulator
   :members:
   :special-members: __init__

Codon Simulators
----------------

.. currentmodule:: crabml.simulate.codon

M0CodonSimulator
~~~~~~~~~~~~~~~~

.. autoclass:: M0CodonSimulator
   :members:
   :special-members: __init__

SiteClassCodonSimulator
~~~~~~~~~~~~~~~~~~~~~~~~

.. autoclass:: SiteClassCodonSimulator
   :members:
   :special-members: __init__

M1aSimulator
~~~~~~~~~~~~

.. autoclass:: M1aSimulator
   :members:
   :special-members: __init__

M2aSimulator
~~~~~~~~~~~~

.. autoclass:: M2aSimulator
   :members:
   :special-members: __init__

M7Simulator
~~~~~~~~~~~

.. autoclass:: M7Simulator
   :members:
   :special-members: __init__

M8Simulator
~~~~~~~~~~~

.. autoclass:: M8Simulator
   :members:
   :special-members: __init__

Output Utilities
----------------

.. currentmodule:: crabml.simulate.output

SimulationOutput
~~~~~~~~~~~~~~~~

.. autoclass:: SimulationOutput
   :members: